| Quality Checks |
| Publisher Version: | IG Publisher Version: v1.3.16 |
| Publication Code: | n/a . PackageId = NCPI-FHIR-Implementation-Guide, Canonical = https://nih-ncpi.github.io/ncpi-fhir-ig |
| Realm Check for n/a: | |
| Publication Request: | - This IG has never been published
- This IG has never been published, so the version should start with '0.' or include a patch version e.g. '-ballot'
- No publication request found
|
| Supressed Messages: | No Suppressed Issues
|
| Dependency Checks: | | Package | Version | FHIR | Canonical | Web Base | Comment |
|---|
  NCPI-FHIR-Implementation-Guide | 0.2.0 | R4 | https://nih-ncpi.github.io/ncpi-fhir-ig | | |
 hl7.terminology.r4 | 5.0.0 O | R4 | http://terminology.hl7.org | http://terminology.hl7.org/5.0.0 | Latest Release is 5.1.0 |
| hl7.fhir.uv.extensions.r4 | 1.0.0 M | R4 | http://hl7.org/fhir/extensions | http://hl7.org/fhir/extensions/1.0.0 | |
 hl7.fhir.us.core | 3.1.1 O | R4 | http://hl7.org/fhir/us/core | http://hl7.org/fhir/us/core/STU3.1.1 | Latest Release is 6.0.0 |
Templates: fhir.base.template#current |
| Dependent IGs: | no references |
| Global Profiles: | (none declared) |
| HTA Analysis: | Non-HL7 Igs are exempt from terminology dependency analysis |
| R5 Dependencies: | (none) |
| Modifier Extensions: | (none) |
| Previous Version Comparison: | Unable to compare with previous version: Unable to find version history at https://nih-ncpi.github.io/ncpi-fhir-ig (Problem #1 with package-list.json at https://nih-ncpi.github.io/ncpi-fhir-ig: Invalid HTTP response 404 from https://nih-ncpi.github.io/ncpi-fhir-ig/package-list.json?nocache=1686584986579 (Not Found) (content in /tmp/http-log/fhir-http-2.log)) |
| IPA Comparison: | n/a |
| Summary: | errors = 32, warn = 64, info = 31, broken links = 18 |
| output/Observation-example-observation-data-row-1.html#/html/body/div/div/div/div/div/div/p/a at Line 287, column 130 | error | The link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "demographics" cannot be resolved |
| output/Observation-example-observation-data-row-1.html#/html/body/div/div/div/div/div/div/p/a at Line 287, column 389 | error | The link 'CodeSystem-example-study-dd-datatable-codesystem-1.html' for "CodeSystem" cannot be resolved |
| output/Observation-example-study-summary-gender.html#/html/body/div/div/div/div/div/div/p/a at Line 285, column 653 | error | The link 'CodeSystem-example-study-dd-datatable-codesystem-1.html' for "demographics-table" cannot be resolved |
| output/Organization-ncpi-research-consortium-01.html#/html/body/div/div/div/div/div/div/p/a at Line 283, column 601 | error | The link 'www.consortium-home.org' for "www.consortium-home.org" cannot be resolved |
| output/Questionnaire-example-questionnaire-demographics-1.html#/html/body/div/div/div/div/div/div/p/a at Line 310, column 98 | error | The link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "Demographics CodeSystem" cannot be resolved |
| output/ValueSet-datatable-mappings-valueset-1.html#/html/body/div/div/div/div/div/div/ul/li/table/tr/td/a at Line 321, column 1106 | error | The link 'CodeSystem-hpo.html#hpo-HP.580010772' for "HP:0010772" cannot be resolved (valid targets: 1893 targets) |
| output/ValueSet-datatable-mappings-valueset-1.html#/html/body/div/div/div/div/div/div/ul/li/table/tr/td/a at Line 321, column 1466 | error | The link 'CodeSystem-mondo.html#mondo-0017705' for "0017705" cannot be resolved (valid targets: [mondo-MONDO.580008542, segment-header, publish-box, bottom, segment-post-footer, codesystem-mondo-disease-ontology, mondo-MONDO.580005072, ig-status, mondo-MONDO.580002749, top, root, stripe, segment-footer, segment-navbar, segment-content, mondo-MONDO.580016033, segment-breadcrumb, mondo-MONDO.580016054]) |
| output/ValueSet-datatable-mappings-valueset-1.html#/html/body/div/div/div/div/div/div/ul/li/table/tr/td/a at Line 321, column 1592 | error | The link 'CodeSystem-mondo.html#mondo-0007130' for "0007130" cannot be resolved (valid targets: [mondo-MONDO.580008542, segment-header, publish-box, bottom, segment-post-footer, codesystem-mondo-disease-ontology, mondo-MONDO.580005072, ig-status, mondo-MONDO.580002749, top, root, stripe, segment-footer, segment-navbar, segment-content, mondo-MONDO.580016033, segment-breadcrumb, mondo-MONDO.580016054]) |
| output/ValueSet-datatable-valueset-1.html#/html/body/div/div/div/div/div/div/table/tr/td/a at Line 325, column 3418 | error | The link 'CodeSystem-hpo.html#hpo-HP.580010772' for "HP:0010772" cannot be resolved (valid targets: 1893 targets) |
| output/ValueSet-datatable-valueset-1.html#/html/body/div/div/div/div/div/div/table/tr/td/a at Line 325, column 3517 | error | The link 'CodeSystem-mondo.html#mondo-MONDO.580017705' for "MONDO:0017705" cannot be resolved (valid targets: [mondo-MONDO.580008542, segment-header, publish-box, bottom, segment-post-footer, codesystem-mondo-disease-ontology, mondo-MONDO.580005072, ig-status, mondo-MONDO.580002749, top, root, stripe, segment-footer, segment-navbar, segment-content, mondo-MONDO.580016033, segment-breadcrumb, mondo-MONDO.580016054]) |
| output/ValueSet-datatable-valueset-1.html#/html/body/div/div/div/div/div/div/table/tr/td/a at Line 325, column 3626 | error | The link 'CodeSystem-mondo.html#mondo-MONDO.580007130' for "MONDO:0007130" cannot be resolved (valid targets: [mondo-MONDO.580008542, segment-header, publish-box, bottom, segment-post-footer, codesystem-mondo-disease-ontology, mondo-MONDO.580005072, ig-status, mondo-MONDO.580002749, top, root, stripe, segment-footer, segment-navbar, segment-content, mondo-MONDO.580016033, segment-breadcrumb, mondo-MONDO.580016054]) |
| output/example_raw_data.html#/html/body/div/div/div/div/div/table/tbody/tr/td/a at Line 256, column 114 | error | The link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "dataset CodeSystem" cannot be resolved |
| output/example_raw_data.html#/html/body/div/div/div/div/div/p/a at Line 266, column 329 | error | The link 'ObservationDefinition-example-study-dd-variable-1-1.json.html' for "subjectid" cannot be resolved |
| output/example_raw_data.html#/html/body/div/div/div/div/div/p/a at Line 266, column 475 | error | The link 'ObservationDefinition-example-study-dd-variable-1-2.json.html' for "gender" cannot be resolved |
| output/example_raw_data.html#/html/body/div/div/div/div/div/p/a at Line 281, column 569 | error | The link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "demographics" cannot be resolved |
| output/example_raw_data.html#/html/body/div/div/div/div/div/p/a at Line 281, column 868 | error | The link 'CodeSystem-example-study-dd-datatable-codesystem-1.html' for "CodeSystem" cannot be resolved |
| output/research_study.html#/html/body/div/div/div/div/div/p/a at Line 255, column 65 | error | The link 'StructureDefinition-research-consortium.html' for "NCPI ResearchConsortium" cannot be resolved |
| output/research_study.html#/html/body/div/div/div/div/div/ul/li/p/a at Line 278, column 9 | error | The link 'StructureDefinition-research-consortium.html' for "ResearchConsortium" cannot be resolved |
| 1 | warning | The HTML fragment 'ip-statements.xhtml' is not included anywhere in the produced implementation guide |
| 2 | warning | An HTML fragment from the set [cross-version-analysis.xhtml, cross-version-analysis-inline.xhtml] is not included anywhere in the produced implementation guide |
| 3 | warning | An HTML fragment from the set [dependency-table.xhtml, dependency-table-short.xhtml] is not included anywhere in the produced implementation guide |
| 4 | warning | The HTML fragment 'globals-table.xhtml' is not included anywhere in the produced implementation guide |
| Path | Severity | Message |
| ConceptMap.group[0].target (l1/c6791) | warning | Unknown Target Code System https://uts.nlm.nih.gov/uts/umls, so the target codes cannot be checked |
| ConceptMap.group[2].target (l1/c7450) | warning | Target Code System http://purl.obolibrary.org/obo/hp.owl doesn't have all content (content = fragment), so the target codes cannot be checked |
| ConceptMap.group[3].target (l1/c7927) | warning | Target Code System http://purl.obolibrary.org/obo/mondo.owl doesn't have all content (content = fragment), so the target codes cannot be checked |
| ConceptMap (l1/c7929) | warning | The ShareableConceptMap profile says that the title element is mandatory, but it is not present. Published concept maps SHOULD conform to the ShareableConceptMap profile |
| ConceptMap (l1/c7929) | warning | The ShareableConceptMap profile recommends that the name element is populated, but it is not present. Published concept maps SHOULD conform to the ShareableConceptMap profile |
| ConceptMap (l1/c7929) | warning | The ShareableConceptMap profile says that the experimental element is mandatory, but it is not present. Published concept maps SHOULD conform to the ShareableConceptMap profile |
| ConceptMap (l1/c7929) | warning | The ShareableConceptMap profile says that the description element is mandatory, but it is not present. Published concept maps SHOULD conform to the ShareableConceptMap profile |
| Path | Severity | Message |
| Observation.code.coding[0] (l7/c8) | error | Wrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary' |
| Observation.component[0].code.coding[0] (l23/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[1].code.coding[0] (l34/c12) | error | Wrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount' |
| Observation.component[2].code.coding[0] (l46/c12) | error | Wrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant' |
| Observation.component[3].code.coding[0] (l58/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Path | Severity | Message |
| Observation.code.coding[0] (l7/c8) | error | Wrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary' |
| Observation.component[0].code.coding[0] (l23/c12) | error | Wrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount' |
| Observation.component[1].code.coding[0] (l35/c12) | error | Wrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant' |
| Observation.component[2].code.coding[0] (l47/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[3].code.coding[0] (l58/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[4].code.coding[0] (l69/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[5].code.coding[0] (l80/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[6].code.coding[0] (l91/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[7].code.coding[0] (l101/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[8].code.coding[0] (l111/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Path | Severity | Message |
| ValueSet.compose[0].include[0] | warning | Unknown System 'https://uts.nlm.nih.gov/uts/umls' specified, so Concepts and Filters can't be checked (Details: Code System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated) |
| ValueSet.compose[0].include[2].concept[0] | information | Unknown Code 'HP:0010772' in the system 'http://purl.obolibrary.org/obo/hp.owl' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment |
| ValueSet.compose[0].include[3].concept[0] | information | Unknown Code '0017705' in the system 'http://purl.obolibrary.org/obo/mondo.owl' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment |
| ValueSet (l1/c3364) | warning | The ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile |
| ValueSet.where(id = 'datatable-mappings-valueset-1') | warning | Error from server: Unable to provide support for code system https://uts.nlm.nih.gov/uts/umls (see Tx log) |
| fsh-generated/resources/CodeSystem-ConditionInheritanceMode.json | The ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-ConditionInheritanceMode.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1.json | The ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1.json | The ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-hpo.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-ncpi.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-ncpi-data-types.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-ncpi-study-type.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-nih-consent.json | The ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-nih-consent.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-v3-hgvs.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-hpo.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo) does not match the URL (http://purl.obolibrary.org/obo/hp.owl) |
| fsh-generated/resources/CodeSystem-loinc-answers.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-loinc-answers.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/loinc-answers) does not match the URL (ncpi:loinc-answers) |
| fsh-generated/resources/CodeSystem-mondo.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo) does not match the URL (http://purl.obolibrary.org/obo/mondo.owl) |
| fsh-generated/resources/CodeSystem-ncit.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl) |
| fsh-generated/resources/CodeSystem-ncpi-study-type.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi-study-type.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-study-type) does not match the URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-study-types) |
| fsh-generated/resources/CodeSystem-omim.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim) does not match the URL (https://omim.org/) |
| fsh-generated/resources/CodeSystem-tbd-codes.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes) |
| fsh-generated/resources/CodeSystem-v3-hgvs.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs) does not match the URL (http://varnomen.hgvs.org) |
| fsh-generated/resources/ValueSet-tbd-codes.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes) |
| fsh-generated/resources/ActivityDefinition-example-study-data-dictionary-table-1.json | No valid Display Names found for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-dataset-codesystem-1#demographics in the language Demographic data for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-dataset-codesystem-1#demographics' |
| fsh-generated/resources/Condition-disease-example-1.json | Unknown Code 'NCIT:Neuroblastoma' in the system 'http://purl.obolibrary.org/obo/ncit.owl' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma' |
| fsh-generated/resources/Observation-anvil-summary-cmg.json | Wrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary' |
| fsh-generated/resources/Observation-anvil-summary-cmg.json | Wrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount' |
| fsh-generated/resources/Observation-anvil-summary-cmg.json | Wrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant' |
| fsh-generated/resources/Observation-anvil-summary-phs000711.json | Wrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary' |
| fsh-generated/resources/Observation-anvil-summary-phs000711.json | Wrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount' |
| fsh-generated/resources/Observation-anvil-summary-phs000711.json | Wrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant' |
| fsh-generated/resources/ResearchStudy-cmg-research-study-bhcmg.json | Unknown Code 'HP:0030853' in the system 'http://purl.obolibrary.org/obo/hp.owl' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/hp.owl#HP:0030853' |
| fsh-generated/resources/Specimen-ncpi-research-study-01-specimen-01.json | Unknown Code 'C17610' in the system 'http://purl.obolibrary.org/obo/ncit.owl' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#C17610' |