NCPI FHIR Implementation Guide
0.2.0 - ci-build

NCPI FHIR Implementation Guide - Local Development build (v0.2.0). See the Directory of published versions

Table of Contents

...0 Table of Contents
...1 Home
...2 Authors
...3 Background
...4 Childhood Cancer
...5 Contact
...6 Downloads
...7 Ehr
...8 Example Raw Data
...9 Example Study Metadata
...10 Family
...11 FHIR Basics
...12 Files
...13 Finding a Research Study
...14 Harmonization
...15 Ig Versioning
...16 Modular Ig
...17 Ncpi
...18 Participant
...19 Performing a Genomic Analysis
...20 Rare Disease
...21 Research Study
...22 Structure Definition Study Data Dictionary Variable Note
...23 Study Metadata
...24 Tabular
...25 Use Case Tabular Data
...26 Use Cases
...27 Using Source Data
....28 Artifacts Summary
....28.1 DRS Document Reference
....28.2 NCPI Data Dictionary Harmony
....28.3 NCPI Disease
....28.4 NCPI Family Relationship
....28.5 NCPI Phenotype
....28.6 NCPI Research Study
....28.7 NCPI Study Data Dictionary Data Table
....28.8 NCPI Study Data Dictionary Data Variable
....28.9 NCPI Study Group
....28.10 Raw Data Observation
....28.11 Research Consortium
....28.12 Research Document Reference
....28.13 Research Study Consent
....28.14 Research Study Subject
....28.15 Research Task
....28.16 Study Summary
....28.17 Study Variable Summary
....28.18 DRS Attachment
....28.19 Research Consent Disease Abbreviation
....28.20 Research Study Subject Consent
....28.21 Supporting Information
....28.22 Case/Control Vars for 'status' categoricals
....28.23 Condition Inheritance Pattern
....28.24 Disease Codes
....28.25 Harmonized ValueSet for data table
....28.26 LOINC Answers
....28.27 NCPI FHIR Codes
....28.28 NIH Consent Code ValueSet
....28.29 Phenotype Codes
....28.30 Table ValueSet
....28.31 tbd-codes
....28.32 Condition Inheritance Pattern
....28.33 Data Types for NCPI Research
....28.34 Dataset CodeSystem (lists all tables)
....28.35 Datatable CodeSystem (lists all variables)
....28.36 Human Genome Variation Society nomenclature
....28.37 Human Phenotype Ontology
....28.38 LOINC Answers
....28.39 Mondo Disease Ontology
....28.40 NCI Thesaurus
....28.41 NCPI FHIR Codes
....28.42 NCPI Study Type
....28.43 NIH Consent Codes
....28.44 Online Mendelian Inheritance in Man
....28.45 ToBeDeterminedCodes ('TbdCodes')
....28.46 Baylor Hopkins Center for Mendelian Genomics (BH CMG)
....28.47 Baylor Hopkins Center for Mendelian Genomics (BH CMG)
....28.48 BH CMG Study Participants
....28.49 Concept Map showing representing harmonization mappings
....28.50 Data Dictionary Variable status
....28.51 Data-Dictionary Table
....28.52 diagnostic-implication-1
....28.53 diagnostic-report-1
....28.54 disease-example-1
....28.55 drs-document-reference-example-1
....28.56 ds-bav-consent
....28.57 Example Encounter Study 01 Patient 01
....28.58 Example Group used for Summary Results
....28.59 Example of a Questionnaire to Represent Raw Data
....28.60 Example of a QuestionnaireResponse to Represent Raw Data
....28.61 Example of Raw Data
....28.62 Example Study Data Dictionary Variable age_at_enrollment
....28.63 Example Study Data Dictionary Variable bmi
....28.64 Example Study Data Dictionary Variable gender
....28.65 Example Study Data Dictionary Variable subjectid
....28.66 Example Variable Summary with categories (gender)
....28.67 family-relationship-example-1
....28.68 family-relationship-example-2
....28.69 family-relationship-example-3
....28.70 family-relationship-example-4
....28.71 gru-consent
....28.72 HMB-IRB-NPU Consent
....28.73 HMB-NPU Consent
....28.74 NCPI Research Study 01 Specimen 01
....28.75 ncpi-research-consortium-01
....28.76 ncpi-research-study-01
....28.77 ncpi-research-study-01-conset-group-01-main
....28.78 ncpi-research-study-01-group-01-main
....28.79 ncpi-research-study-01-patient-01
....28.80 ncpi-research-study-01-patient-02
....28.81 ncpi-research-study-subject-01
....28.82 organization-example-1
....28.83 Participants consented under HMB-IRB-NPU
....28.84 Participants consented under HMB-IRB-NPU
....28.85 Participants consented under HMB-NPU
....28.86 Participants consented under HMB-NPU
....28.87 patient-example-1
....28.88 patient-example-2
....28.89 patient-example-3
....28.90 phenotype-example-1
....28.91 practitioner-example-1
....28.92 practitioner-role-example-1
....28.93 research-document-reference-example-1
....28.94 research-study-cmg
....28.95 research-study-example-1
....28.96 research-study-phs000711
....28.97 research-subject-example-1
....28.98 research-subject-example-2
....28.99 research-subject-example-3
....28.100 research-subject-study-01-patient-01
....28.101 research-subject-study-01-patient-02
....28.102 specimen-example-1
....28.103 Summary detail for Center for Mendelian Genomics
....28.104 task-example-1
....28.105 task-example-2
....28.106 The Center for Mendelian Genomics Consortium (CMG) Consortium
....28.107 variant-example-1